Printing the low order bits of the address shows that it is not aligned to a word boundary ("dword" using x86 terminology). How To Decompress 1000Genomes Bgzip-Compressed Files Using Java (cross posted on stack-overflow ) Ok. I then installed ipython: fink --no-use-binary-dist install ipython-py23 (I followed the fink FAQ http://fink.sourceforge.net/faq/usage-fink.php?phpLang=en#unstable to get ipython into the list of known applications: copied /sw/fink/10.4-transitional/unstable/main/finkinfo/languages/ipython-py.info to /sw/fink/dists/local/main/finkinfo.) Unfortunately (!!!!), I still Real valued polynomial has real coefficients My boss asks me to stop writing small functions and do everything in the same loop Why are static password requirements used so frequently? have a peek at this web-site
more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed about • faq • rss Community Log In Sign Up Add New Post Question: Getting 'Bus Error: 10' When Running The Prody Package On A Multiple Sequence Alignment 0 3.7 years Samtools To Analyze Bwa Output I have a query file with 70,000 lines of sequences and when I do the bwasw each sam output file i... However, it is not clear where the bug comes from and it shows up in ipython (only so far).
Really no clue. What's the difference between generating all possible genotypes from a MSA and extracting a consensus sequence? Can you just attach a debugger to the process and backtrace when you hit the bus error? –Brian McFarland May 2 at 15:39 add a comment| 1 Answer 1 active oldest Please help improve this article by adding citations to reliable sources.
It should crash immediately. Note in that issue there is currently no perfect fix for this: we've had to heuristically adjust the maximum default stack size based on experience with different compilers and trying not In my experience SIGBUS has always been an alignment error. I have seen examples of getting a consensus sequence by using software like UGENE or JalView.
ERROR test_nameprep (test.test_codecs.NameprepTest) ... References ^ z/Architecture Principles of Operation, SA22-7832-04, Page 6-6, Fifth Edition (September, 2005) IBM Corporation, Poukeepsie, NY, Retrievable from http://publibfp.dhe.ibm.com/epubs/pdf/a2278324.pdf (Retrieved December 31, 2015) ^ https://groups.google.com/group/comp.unix.internals/browse_thread/thread/6369e8f923aedcb0/54f8ed15e326dc0[unreliable source?] v t e Operating Paging errors FreeBSD, Linux and Solaris can signal a bus error when virtual memory pages cannot be paged in, e.g. Why is nuclear waste more dangerous than the original nuclear fuel?
To determine the cause it would be nice to see the code. –extraneon Nov 25 '09 at 15:21 add a comment| 2 Answers 2 active oldest votes up vote 1 down I can switch to another hardware and get the same problems. Clustalw Alignment Error In Biopython Hi , I tried the following code to run clustalw . How can I filter a vcf file by DP and GQ using the R package VariantAnnotation?
There isn't a simple test case but I do have an open source app which where I am able to replicate this always on my system. 0. Clustalw Ignoring Custom Weight Matrix I'm attempting to specify a custom match/mismatch matrix for CLUSTALW 2.1 doing a pairwise DNA al... thanks python osx osx-snow-leopard macports share|improve this question edited Mar 8 '10 at 2:48 Jon Seigel 9,56254381 asked Nov 25 '09 at 15:02 kevin 1,14761931 Well, you're accessing memory Apps should cease use of QuickDraw and move to Quartz.
Did you do a 'from test import testall' in Python or 'make test' from the shell ? Could you tell me if it still crashes if you replace the current os.environ line with this: os.environ['SDL_VIDEO_CENTERED'] = "TRUE" -Mek pdehaye commented Jan 31, 2015 I got the same bus Suggestions where to report this problem are also welcome. Browse other questions tagged python osx osx-snow-leopard macports or ask your own question.
The fink version is: Vigor10:~ fangohr$ fink --version Package manager version: 0.23.10 Distribution version: 0.8.0.rsync Then I experienced the problems described in my last email, i.e. msg168701 - (view) Author: Ronald Oussoren (ronaldoussoren) * Date: 2012-08-20 20:54 The bug report mentions python 2.7.1. armor proficiency feats Meaning of '2> >(command)' Redirection in Bash Finding The nth Prime such that the prime - 1 is divisible by n Create new tab config in admin magento2 I'm asking because that particular line is highly unsuspicious.
asked 6 years ago viewed 843 times active 4 years ago Upcoming Events 2016 Community Moderator Election ends in 4 days Related 109What is the most compatible way to install python Extracting Info From A Column Of Vcf File? Kenny ******************************************************************************* tout casse, tout passe, tout lasse. ******************************************************************************* erno-news at erno Feb1,2002,6:41AM Post #2 of 5 (3666 views) Permalink What is a "bus error"? [In reply to] In article
I realise that this is the ipython list and that -- following earlier emails -- it is unlikely that ipython causes such a low-lever error.
I have aligned my reads with Bowtie with the com... Last (and first) time I get a "bus error" a couple of weeks ago was while running some git commands, but it may have been anything since the root cause was msg168736 - (view) Author: Ronald Oussoren (ronaldoussoren) * Date: 2012-08-21 04:54 The stack size problem was issue #9670. Could you try to reproduce using the most recent release, or a fresh checkout?
Systems tolerate this inefficient algorithm, as it is an essential feature for most software, especially string processing. The problem appeared after a year of successful work. more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed cf: "What happens if Guido is hit by a bus?" (From early Python history.) --John (who only did this because you've gotten real answers already) Index | Next | Previous
Higher up doesn't carry around their security badge and asks others to let them in. I can't test on that platform, so I must rely on its users to debug this problem. We recommend upgrading to the latest Safari, Google Chrome, or Firefox. I haven't pygame installed to work with python3, so I haven't been able to test it.
SIGBUS commonly results from attempting to access unaligned memory. Whatever it maybe, but the process must not crash like that.